| 000 -LEADER |
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| fixed length control field |
06197nam a2200697 i 4500 |
| 001 - CONTROL NUMBER |
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| control field |
6812638 |
| 003 - CONTROL NUMBER IDENTIFIER |
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| control field |
IEEE |
| 005 - DATE AND TIME OF LATEST TRANSACTION |
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| control field |
20200413152902.0 |
| 006 - FIXED-LENGTH DATA ELEMENTS--ADDITIONAL MATERIAL CHARACTERISTICS |
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m eo d |
| 007 - PHYSICAL DESCRIPTION FIXED FIELD--GENERAL INFORMATION |
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cr cn |||m|||a |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION |
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| fixed length control field |
110617s2011 caua foab 000 0 eng d |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER |
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| International Standard Book Number |
9781608451463 (electronic bk.) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER |
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| Canceled/invalid ISBN |
9781608451456 (pbk.) |
| 024 7# - OTHER STANDARD IDENTIFIER |
|---|
| Standard number or code |
10.2200/S00360ED1V01Y201105BME041 |
| Source of number or code |
doi |
| 035 ## - SYSTEM CONTROL NUMBER |
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| System control number |
(CaBNVSL)gtp00548364 |
| 035 ## - SYSTEM CONTROL NUMBER |
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| System control number |
(OCoLC)742535641 |
| 040 ## - CATALOGING SOURCE |
|---|
| Original cataloging agency |
CaBNVSL |
| Transcribing agency |
CaBNVSL |
| Modifying agency |
CaBNVSL |
| 050 #4 - LIBRARY OF CONGRESS CALL NUMBER |
|---|
| Classification number |
QH324.2 |
| Item number |
.N253 2011 |
| 082 04 - DEWEY DECIMAL CLASSIFICATION NUMBER |
|---|
| Classification number |
572.80285 |
| Edition number |
22 |
| 100 1# - MAIN ENTRY--PERSONAL NAME |
|---|
| Personal name |
Nalbantoglu, Ozkan Ufuk. |
| 245 10 - TITLE STATEMENT |
|---|
| Title |
Computational genomic signatures |
| Medium |
[electronic resource] / |
| Statement of responsibility, etc. |
Ozkan Ufuk Nalbantoglu and Khalid Sayood. |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. |
|---|
| Place of publication, distribution, etc. |
San Rafael, Calif. (1537 Fourth Street, San Rafael, CA 94901 USA) : |
| Name of publisher, distributor, etc. |
Morgan & Claypool, |
| Date of publication, distribution, etc. |
c2011. |
| 300 ## - PHYSICAL DESCRIPTION |
|---|
| Extent |
1 electronic text (xii, 113 p.) : |
| Other physical details |
ill., digital file. |
| 490 1# - SERIES STATEMENT |
|---|
| Series statement |
Synthesis lectures on biomedical engineering, |
| International Standard Serial Number |
1930-0336 ; |
| Volume/sequential designation |
# 41 |
| 538 ## - SYSTEM DETAILS NOTE |
|---|
| System details note |
Mode of access: World Wide Web. |
| 538 ## - SYSTEM DETAILS NOTE |
|---|
| System details note |
System requirements: Adobe Acrobat Reader. |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Part of: Synthesis digital library of engineering and computer science. |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Series from website. |
| 504 ## - BIBLIOGRAPHY, ETC. NOTE |
|---|
| Bibliography, etc. note |
Includes bibliographical references (p. 85-112). |
| 505 0# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
1. Genome signatures, definition and background -- Definition of computational genomic signatures -- Compositional features as genome signatures -- GC content -- Amino acid content -- Synonymous Codon usage -- Methods of characterization embedded in the initial work on DNA -- Dinucleotide odds ratio as a genome signature -- Chaos game representation -- A unified framework of genome signatures: functions of oligonucleotide -- Occurrence -- Natural selection of proteins vs. directional mutational pressures -- |
| 505 8# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
2. Other computational characterizations as genome signatures -- Long-term correlation statistics as genome signatures -- DNA as an autoregressive process -- Average mutual information profiles -- Signatures based on composition vectors -- Markov models -- Abundance profiles of oligonucleotides -- Oligonucleotide frequency derived error gradient (OFDEG) -- DNA entropy -- Methods of estimating DNA entropy -- Historical notes on biological complexity and DNA entropy -- Correlation of DNA entropy with OFDEG signatures -- |
| 505 8# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
3. Measuring distance of biological sequences using genome signatures -- Classical methods: euclidian distances and correlation statistics -- Distances based on model fitness -- Likelihood functions -- Indexing based on oligonucleotide abundance -- Minimum description length calculation based on linguistic models -- |
| 505 8# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
4. Applications: phylogeny construction -- A half century of molecular phylogenetics and the need for universal methods -- Phylogenetic signals in genome signatures -- Phylogeny with information theoretic distance measures and implicit genome signatures -- Phylogeny construction by genome signatures using genomic fragments -- Drawbacks of genome-signature-based phylogeny construction -- |
| 505 8# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
5. Applications: metagenomics -- Community analysis of environmental samples -- Sampling and sequencing environmental samples -- Exploration of biodiversity in a metagenome -- Metagenome assembly -- Metagenome binning -- Similarity search-based binning methods -- Supervised compositional binning methods -- Unsupervised methods -- |
| 505 8# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
6. Applications: horizontal DNA transfer detection -- Horizontal gene transfer -- Horizontal gene transfer in prokaryotes -- Horizontal gene transfer in eukaryotes -- Horizontal gene transfer detection -- Comparative methods -- Methods based on genome signatures -- Performance and limitations of genome signatures for horizontal transfer detection -- Compositional similarity of host and donor genomes -- Other challenges limiting the performance of genome-signature-based horizontal transfer detection -- Amelioration and deviation from general genomic signature trends -- |
| 505 8# - FORMATTED CONTENTS NOTE |
|---|
| Formatted contents note |
Bibliography -- Authors' biography. |
| 506 1# - RESTRICTIONS ON ACCESS NOTE |
|---|
| Terms governing access |
Abstract freely available; full-text restricted to subscribers or individual document purchasers. |
| 510 0# - CITATION/REFERENCES NOTE |
|---|
| Name of source |
Compendex |
| 510 0# - CITATION/REFERENCES NOTE |
|---|
| Name of source |
INSPEC |
| 510 0# - CITATION/REFERENCES NOTE |
|---|
| Name of source |
Google scholar |
| 510 0# - CITATION/REFERENCES NOTE |
|---|
| Name of source |
Google book search |
| 520 3# - SUMMARY, ETC. |
|---|
| Summary, etc. |
Recent advances in development of sequencing technology has resulted in a deluge of genomic data. In order to make sense of this data, there is an urgent need for algorithms for data processing and quantitative reasoning. An emerging in silico approach, called computational genomic signatures, addresses this need by representing global species-specific features of genomes using simple mathematical models. This text introduces the general concept of computational genomic signatures, and it reviews some of the DNA sequence models which can be used as computational genomic signatures. The text takes the position that a practical computational genomic signature consists of both a model and a measure for computing the distance or similarity between models. Therefore, a discussion of sequence similarity/distance measurement in the context of computational genomic signatures is presented. The remainder of the text covers various applications of computational genomic signatures in the areas of metagenomics, phylogenetics and the detection of horizontal gene transfer. |
| 530 ## - ADDITIONAL PHYSICAL FORM AVAILABLE NOTE |
|---|
| Additional physical form available note |
Also available in print. |
| 588 ## - SOURCE OF DESCRIPTION NOTE |
|---|
| Source of description note |
Title from PDF t.p. (viewed on June 17, 2011). |
| 650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name entry element |
Bioinformatics. |
| 650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name entry element |
Genomics. |
| 653 ## - INDEX TERM--UNCONTROLLED |
|---|
| Uncontrolled term |
Genome |
| 653 ## - INDEX TERM--UNCONTROLLED |
|---|
| Uncontrolled term |
Markov models |
| 653 ## - INDEX TERM--UNCONTROLLED |
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| Uncontrolled term |
Minimum description length |
| 653 ## - INDEX TERM--UNCONTROLLED |
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| Uncontrolled term |
Kolmogorov complexity |
| 653 ## - INDEX TERM--UNCONTROLLED |
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| Uncontrolled term |
Phylogeny |
| 653 ## - INDEX TERM--UNCONTROLLED |
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| Uncontrolled term |
Classification |
| 653 ## - INDEX TERM--UNCONTROLLED |
|---|
| Uncontrolled term |
Horizontal gene transfer |
| 653 ## - INDEX TERM--UNCONTROLLED |
|---|
| Uncontrolled term |
Metagenomics |
| 653 ## - INDEX TERM--UNCONTROLLED |
|---|
| Uncontrolled term |
Bioinformatics |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Sayood, Khalid. |
| 776 08 - ADDITIONAL PHYSICAL FORM ENTRY |
|---|
| Relationship information |
Print version: |
| International Standard Book Number |
9781608451456 |
| 830 #0 - SERIES ADDED ENTRY--UNIFORM TITLE |
|---|
| Uniform title |
Synthesis digital library of engineering and computer science. |
| 830 #0 - SERIES ADDED ENTRY--UNIFORM TITLE |
|---|
| Uniform title |
Synthesis lectures on biomedical engineering, |
| International Standard Serial Number |
1930-0336 ; |
| Volume/sequential designation |
# 41. |
| 856 42 - ELECTRONIC LOCATION AND ACCESS |
|---|
| Materials specified |
Abstract with links to resource |
| Uniform Resource Identifier |
http://ieeexplore.ieee.org/servlet/opac?bknumber=6812638 |
